Welcome to RBP2GO
RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding proteins, their interactions and functions. RBP2GO offers three search options for each species, which can be accessed via the sidebar under SEARCH SPECIES. More details can be found in the HELP menu.
Species
13
RBP candidates
22552
References
RBP2GO: A comprehensive, pan-species database on RNA-binding proteins, their interactions and functions. Caudron-Herger et al. Nucleic Acids Research 2021.
R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation. Caudron-Herger et al. Molecular Cell 2019.
Identification, quantification and bioinformatic analysis of RNA-dependent proteins by RNase treatment and density gradient ultracentrifugation using R-DeeP. Caudron-Herger et al. Nature Protocols 2020.
A database on RNA-dependent proteins (R-DeeP) is also available here.
RBP candidates
6100
Homo sapiens
Human Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
Limited to CGC Genes
GO List
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RBP candidates
2897
Mus musculus
Mouse Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
311
Danio rerio
Zebrafish Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
2982
Drosophila melanogaster
Fly Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
1873
Caenorhabditis elegans
C. elegans Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
2155
Saccharomyces cerevisiae
S. cerevisiae Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
2352
Arabidopsis thaliana
A. thaliana Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
169
Trypanosoma brucei
T. brucei Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
79
Leishmania donovani
L. donovani Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
1162
Leishmania mexicana
L. mexicana Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
1030
Plasmodium falciparum
P. falciparum Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
226
Salmonella enterica subsp. enterica ser. Typhimurium
S. enterica Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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RBP candidates
1216
Escherichia coli
E. coli Protein of Interest
Enter a protein ID, gene name or protein name into the search field:
Gene Ontology
Enter a Gene Ontology (GO) term or a keyword into the search field:
Advanced search option including search for list of proteins or GO terms.
Protein List
GO List
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Data Download
- In this section, all datasets used in the RBP2GO database are available for download.
- IMPORTANTLY, the datasets contain a large amount of information, in particular, the complete GO trees are included, so that the datasets are not displayed properly e.g. in Excel. Therefore, we recommend to work with these datasets using for example RStudio or other suitable programs of your choice.
- The dataset sizes range from about 400 KB to 105 MB.
Homo sapiens
Mus musculus
Danio rerio
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae
Arabidopsis thaliana
Trypanosoma brucei
Leishmania donovani
Leishmania mexicana
Plasmodium falciparum
Salmonella Typhimurium
Escherichia coli
